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jpsmith5/pepatac:0.1.0

Manifest digest

sha256:1a85b6cc383b38487f592831a0f77adede2e4a3b07434ab163fa3dd6afa062bf

OS/ARCH

linux/amd64

Compressed size

2.1 GB

Last pushed

over 8 years by jpsmith5

Type

Image

Manifest digest

sha256:1a85b6cc383b38487f592831a0f77adede2e4a3b07434ab163fa3dd6afa062bf

Image Layers

Image Layers

1ADD file ... in / 40.97 MB
2/bin/sh -c set -xe &&847 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*620 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'854 B
5/bin/sh -c mkdir -p /run/systemd169 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Phusion <[email protected]>0 B
8COPY dir:07743f22f65309c3cae28e2a3cc337bd9332363166589c2603af03e81d149628 in /bd_build 14.61 KB
9/bin/sh -c /bd_build/prepare.sh && /bd_build/system_services.sh47.22 MB
10ENV DEBIAN_FRONTEND=teletype LANG=en_US.UTF-8 LANGUAGE=en_US:en0 B
11CMD ["/sbin/my_init"]0 B
12MAINTAINER Jason Smith "[email protected]"0 B
13CMD ["/sbin/my_init"]0 B
14/bin/sh -c apt-get update &&267.32 MB
15/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get install57.21 MB
16/bin/sh -c pip install --upgrade3.56 MB
17/bin/sh -c pip install virtualenv30.01 MB
18/bin/sh -c pip install MACS210.48 MB
19/bin/sh -c echo "deb http://cran.rstudio.com/bin/linux/ubuntu881 B
20/bin/sh -c gpg --keyserver keyserver.ubuntu.com5.92 KB
21/bin/sh -c gpg -a --export13.09 KB
22/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get --assume-yes73.37 MB
23/bin/sh -c echo "r <-211 B
24/bin/sh -c Rscript -e "install.packages('gplots')"1.92 MB
25/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get install4.14 MB
26/bin/sh -c mkdir /home/src112 B
27/bin/sh -c mkdir /home/tools114 B
28WORKDIR /home/src/0 B
29/bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.7/htslib-1.7.tar.bz21.02 MB
30/bin/sh -c tar xf htslib-1.7.tar.bz21.15 MB
31WORKDIR /home/src/htslib-1.70 B
32/bin/sh -c ./configure --prefix /home/tools/16.89 KB
33/bin/sh -c make17.07 MB
34/bin/sh -c make install5.35 MB
35WORKDIR /home/src/0 B
36/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.7/samtools-1.7.tar.bz24.05 MB
37/bin/sh -c tar xf samtools-1.7.tar.bz25 MB
38WORKDIR /home/src/samtools-1.70 B
39/bin/sh -c ./configure30.46 KB
40/bin/sh -c make13.62 MB
41/bin/sh -c make install1.9 MB
42WORKDIR /home/src/0 B
43/bin/sh -c wget https://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.3.4.1/bowtie2-2.3.4.1-source.zip5.45 MB
44/bin/sh -c unzip bowtie2-2.3.4.1-source.zip5.24 MB
45WORKDIR /home/src/bowtie2-2.3.4.10 B
46/bin/sh -c make12.36 MB
47/bin/sh -c make install12.38 MB
48WORKDIR /home/tools/bin0 B
49/bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.18.0/picard.jar26.06 MB
50/bin/sh -c chmod +x picard.jar26.06 MB
51WORKDIR /home/src/0 B
52/bin/sh -c git clone git://github.com/ENCODE-DCC/kentUtils.git667.85 MB
53WORKDIR /home/src/kentUtils0 B
54/bin/sh -c make197.94 MB
55/bin/sh -c rsync -a -P608.46 MB
56WORKDIR /home/src/0 B
57/bin/sh -c git clone git://github.com/relipmoc/skewer.git179.23 KB
58WORKDIR /home/src/skewer0 B
59/bin/sh -c make175.74 KB
60/bin/sh -c make install83.08 KB
61WORKDIR /home/src/0 B
62/bin/sh -c wget https://github.com/aboyle/F-seq/archive/master.zip67.39 KB
63/bin/sh -c unzip master.zip61.13 KB
64WORKDIR /home/src/F-seq-master0 B
65/bin/sh -c ant166.6 KB
66WORKDIR /home/src/F-seq-master/dist~0 B
67/bin/sh -c tar xf fseq.tgz60.9 KB
68WORKDIR /home/src/0 B
69/bin/sh -c wget http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip127.92 KB
70/bin/sh -c unzip Trimmomatic-0.36.zip128.44 KB
71/bin/sh -c chmod +x Trimmomatic-0.36/trimmomatic-0.36.jar114.55 KB
72ENV PATH=/home/tools/bin:/home/tools/bin/kentUtils/:/home/src/F-seq-master/dist~/fseq/bin:/home/src/bowtie2-2.3.4.1:/home/src/skewer:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin TRIMMOMATIC=/home/src/Trimmomatic-0.36/trimmomatic-0.36.jar PICARD=/home/tools/bin/picard.jar0 B
73WORKDIR /home/0 B
74CMD ["/bin/bash"]0 B
75/bin/sh -c apt-get clean &&1.06 KB

Command

ADD file:c753df38640ab6e246d9e66f0cef7156b7003976080b1e0b83e5717cd6ef1725 in /