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jpsmith5/pepatac:0.9.4

Manifest digest

sha256:0dc91d19e324e81728fcda7384b68717bfbe037c130b437aff0222a623564761

OS/ARCH

linux/amd64

Compressed size

860.38 MB

Last pushed

over 7 years by jpsmith5

Type

Image

Manifest digest

sha256:0dc91d19e324e81728fcda7384b68717bfbe037c130b437aff0222a623564761

Image Layers

Image Layers

1ADD file ... in / 41.23 MB
2/bin/sh -c set -xe &&846 B
3/bin/sh -c rm -rf /var/lib/apt/lists/*618 B
4/bin/sh -c sed -i 's/^#\s*\(deb.*universe\)$/\1/g'854 B
5/bin/sh -c mkdir -p /run/systemd168 B
6CMD ["/bin/bash"]0 B
7MAINTAINER Phusion <[email protected]>0 B
8COPY dir:4bd989b4c37b19d01f09856e26b6e90d784436a16d92d7c48ed8e5e04d5b6366 in /bd_build 14.68 KB
9/bin/sh -c /bd_build/prepare.sh && /bd_build/system_services.sh43.35 MB
10ENV DEBIAN_FRONTEND=teletype LANG=en_US.UTF-8 LANGUAGE=en_US:en0 B
11CMD ["/sbin/my_init"]0 B
12LABEL maintainer=Jason Smith [email protected]0 B
13LABEL version=0.9.40 B
14CMD ["/sbin/my_init"]0 B
15/bin/sh -c apt-get update &&279.98 MB
16/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get install57.14 MB
17/bin/sh -c pip install --upgrade3.51 MB
18/bin/sh -c pip install virtualenv122.52 MB
19/bin/sh -c pip uninstall --yes10.53 MB
20/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get --assume-yes156.06 MB
21/bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get install3.79 MB
22WORKDIR /home/tools/148 B
23/bin/sh -c wget http://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.7.zip &&19.39 MB
24WORKDIR /home/src/145 B
25/bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.7/htslib-1.7.tar.bz2 &&24.66 MB
26WORKDIR /home/src/0 B
27/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.7/samtools-1.7.tar.bz2 &&24.7 MB
28WORKDIR /home/src/0 B
29/bin/sh -c wget https://downloads.sourceforge.net/project/bowtie-bio/bowtie2/2.3.4.1/bowtie2-2.3.4.1-source.zip &&35.44 MB
30WORKDIR /home/tools/0 B
31/bin/sh -c git clone git://github.com/GregoryFaust/samblaster.git460.9 KB
32WORKDIR /home/tools/0 B
33/bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig &&10.61 MB
34WORKDIR /home/src/0 B
35/bin/sh -c git clone git://github.com/relipmoc/skewer.git358.93 KB
36WORKDIR /home/tools/bin0 B
37/bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.18.0/picard.jar &&26.06 MB
38WORKDIR /home/src/0 B
39/bin/sh -c wget https://github.com/aboyle/F-seq/archive/master.zip &&354.25 KB
40WORKDIR /home/src/0 B
41/bin/sh -c wget http://www.usadellab.org/cms/uploads/supplementary/Trimmomatic/Trimmomatic-0.36.zip &&256.28 KB
42ENV PATH=/home/tools/bin:/home/tools/:/home/tools/bin/kentUtils/:/home/src/F-seq-master/dist~/fseq/bin:/home/src/bowtie2-2.3.4.1:/home/src/skewer:/home/src/samtools-1.7:/home/src/Trimmomatic-0.36/:/home/src/htslib-1.7:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin TRIMMOMATIC=/home/src/Trimmomatic-0.36/trimmomatic-0.36.jar PICARD=/home/tools/bin/picard.jar0 B
43WORKDIR /home/0 B
44CMD ["/bin/bash"]0 B
45/bin/sh -c apt-get clean &&881 B

Command

ADD file:204fb7ccb19ff7e863331131138621ff4d22720b3718e8f296902cc7d4f635b5 in /