mgibio/varscan-cwl:v2.4.2-samtools1.3.1

Machine learning & AI

Data science

Manifest digest

sha256:859cadaba2608bb631de3baf45b0e7d65180a2182d5a49e3cfa244bd48039e9b

OS/ARCH

linux/amd64

Compressed size

273.57 MB

Last pushed

over 9 years by mgibio

Type

Image

Manifest digest

sha256:859cadaba2608bb631de3baf45b0e7d65180a2182d5a49e3cfa244bd48039e9b

Image Layers

1ADD file ... in /47.43 MB

2/bin/sh -c set -xe &&823 B

3/bin/sh -c rm -rf /var/lib/apt/lists/*446 B

4/bin/sh -c sed -i 's/^#\s*$deb.*universe$$/\1/g'678 B

5/bin/sh -c mkdir -p /run/systemd160 B

6CMD ["/bin/bash"]0 B

7MAINTAINER Thomas B. Mooney0 B

8LABEL version=1.3.1 description=Samtools image0 B

9/bin/sh -c apt-get update &&81.58 MB

10ENV SAMTOOLS_INSTALL_DIR=/opt/samtools0 B

11WORKDIR /tmp0 B

12/bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.3.1/samtools-1.3.1.tar.bz2 &&8.5 MB

13WORKDIR /tmp/samtools-1.3.10 B

14/bin/sh -c ./configure --enable-plugins --prefix=$SAMTOOLS_INSTALL_DIR25.9 MB

15WORKDIR /0 B

16/bin/sh -c ln -s $SAMTOOLS_INSTALL_DIR/bin/samtools207 B

17ENTRYPOINT ["/usr/bin/samtools"]0 B

18MAINTAINER Thomas B. Mooney0 B

19LABEL version=v2.4.2-1.3.1 description=Varscan+Samtools combined0 B

20/bin/sh -c apt-get update &&110.05 MB

21ENV VARSCAN_INSTALL_DIR=/opt/varscan0 B

22WORKDIR /opt/varscan111 B

23/bin/sh -c wget https://github.com/dkoboldt/varscan/releases/download/2.4.2/VarScan.v2.4.2.jar &&111.44 KB

24WORKDIR /0 B

25ENTRYPOINT []0 B

26ADD file ... in /usr/bin/ 473 B

27CMD ["/usr/bin/cwl_helper.sh"]0 B

Command

ADD file:902bff94e00fb3d9ebb11dc5000a0f0f2400885c56f4fbfb00de394534e282f7 in /