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jpsmith5/pepatac:0.10.2

Manifest digest

sha256:91a7a65e36673e59b416221abfa589bc0f58022cf9f24012d772af186617c016

OS/ARCH

linux/amd64

Compressed size

2.09 GB

Last pushed

almost 4 years by jpsmith5

Type

Image

Manifest digest

sha256:91a7a65e36673e59b416221abfa589bc0f58022cf9f24012d772af186617c016

Image Layers

Image Layers

1ADD file ... in / 29.02 MB
2CMD ["bash"]0 B
3ARG QEMU_ARCH0 B
4COPY . /bd_build # buildkit14.85 KB
5RUN |1 QEMU_ARCH= /bin/sh -c51.47 MB
6ENV DEBIAN_FRONTEND=teletype LANG=en_US.UTF-8 LANGUAGE=en_US:en LC_ALL=en_US.UTF-80 B
7CMD ["/sbin/my_init"]0 B
8LABEL maintainer=Jason Smith [email protected]0 B
9LABEL version=0.10.20 B
10CMD ["/sbin/my_init"]0 B
11RUN /bin/sh -c add-apt-repository ppa:deadsnakes/ppa54.69 MB
12RUN /bin/sh -c apt-get update549.09 MB
13RUN /bin/sh -c apt-get upgrade8.37 MB
14RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get95.6 MB
15RUN /bin/sh -c python3 -m5.49 MB
16RUN /bin/sh -c pip install35 MB
17RUN /bin/sh -c pip install106.59 MB
18RUN /bin/sh -c apt update168.2 KB
19RUN /bin/sh -c apt-key adv199.56 KB
20RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get120.51 MB
21RUN /bin/sh -c Rscript -e227.65 MB
22RUN /bin/sh -c Rscript -e179.55 KB
23RUN /bin/sh -c DEBIAN_FRONTEND=noninteractive apt-get3.69 MB
24WORKDIR /home/tools/145 B
25RUN /bin/sh -c wget https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip19.39 MB
26WORKDIR /home/src/147 B
27RUN /bin/sh -c wget https://github.com/samtools/htslib/releases/download/1.16/htslib-1.16.tar.bz272.96 MB
28WORKDIR /home/src/32 B
29RUN /bin/sh -c wget https://github.com/samtools/samtools/releases/download/1.16.1/samtools-1.16.1.tar.bz246.05 MB
30WORKDIR /home/tools/32 B
31RUN /bin/sh -c wget https://github.com/smithlabcode/preseq/releases/download/v3.1.2/preseq-3.1.2.tar.gz13.64 MB
32WORKDIR /home/src/32 B
33RUN /bin/sh -c wget -O36.99 MB
34WORKDIR /home/tools/32 B
35RUN /bin/sh -c git clone509.91 KB
36WORKDIR /home/tools/32 B
37RUN /bin/sh -c wget http://hgdownload.soe.ucsc.edu/admin/exe/linux.x86_64/bedGraphToBigWig20.23 MB
38WORKDIR /home/src/32 B
39RUN /bin/sh -c wget -O78.26 KB
40WORKDIR /home/src/32 B
41RUN /bin/sh -c git clone3.93 MB
42WORKDIR /home/src/32 B
43RUN /bin/sh -c pip install484.78 KB
44RUN /bin/sh -c wget https://github.com/Boyle-Lab/F-Seq2/archive/master.zip77.84 MB
45WORKDIR /home/tools/32 B
46RUN /bin/sh -c wget http://genometools.org/pub/genometools-1.6.2.tar.gz110.41 MB
47WORKDIR /home/tools/32 B
48RUN /bin/sh -c git clone763.15 KB
49WORKDIR /home/tools/bin170 B
50RUN /bin/sh -c wget https://github.com/LiuLabUB/HMMRATAC/releases/download/1.2.10/HMMRATAC_V1.2.10_exe.jar26.14 MB
51WORKDIR /home/tools/bin32 B
52RUN /bin/sh -c wget http://homer.ucsd.edu/homer/configureHomer.pl53.9 MB
53RUN /bin/sh -c # Install32 B
54WORKDIR /home/tools/32 B
55RUN /bin/sh -c pip install100.2 MB
56WORKDIR /home/tools/bin32 B
57RUN /bin/sh -c wget https://github.com/broadinstitute/picard/releases/download/2.27.5/picard.jar15.41 MB
58WORKDIR /home/tools/32 B
59RUN /bin/sh -c wget -O253.83 MB
60RUN /bin/sh -c exec bash32 B
61WORKDIR /home/src/32 B
62RUN /bin/sh -c wget https://github.com/usadellab/Trimmomatic/files/5854859/Trimmomatic-0.39.zip260.52 KB
63WORKDIR /home/src/32 B
64RUN /bin/sh -c git clone158.11 KB
65ENV JAVA_HOME=/usr/lib/jvm/java-8-openjdk-amd64/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/bin0 B
66RUN /bin/sh -c cd /home/src/F-seq226.5 KB
67ENV PATH=/home/tools/bin:/home/tools/:/home/tools/bin/kentUtils/:/home/src/bowtie2-2.5.0:/home/src/skewer:/home/src/samtools-1.16.1:/home/src/Trimmomatic-0.39/:/home/src/htslib-1.16:/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/bin TRIMMOMATIC=/home/src/Trimmomatic-0.39/trimmomatic-0.39.jar PICARD=/home/tools/bin/picard.jar HMMRATAC=/home/tools/bin/HMMRATAC_V1.2.10_exe.jar0 B
68RUN /bin/sh -c echo 'alias1.56 KB
69RUN /bin/sh -c update-alternatives --install4.45 KB
70WORKDIR /home/32 B
71CMD ["/bin/bash"]0 B
72RUN /bin/sh -c apt-get clean1.02 KB

Command

ADD file:a7268f82a86219801950401c224cabbdd83ef510a7c71396b25f70c2639ae4fa in /